[1] TRINGE S G, VON MERING C, KOBAYASHI A, et al.Comparative metagenomics of microbial communities[J]. Science, 2005, 308(5721): 554-557. [2] HANDELSMAN J, RONDON M R, BRADY S F, et al.Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products[J]. Chemistry & Biology, 1998, 5(10): 245-249. [3] TRINGE S G, RUBIN E M.Metagenomics: DNA sequencing of environmental samples[J]. Nature Reviews Genetics, 2005, 6(11): 805-814. [4] RAES J, FOERSTNER K U, BORK P.Get the most out of your metagenome: computational analysis of environmental sequence data[J]. Current Opinion in Microbiology, 2007, 10(5): 490-498. [5] LUO R, LIU B, XIE Y, et al.SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler[J]. Gigascience, 2012(1): 18. [6] QIN N, YANG F, LI A, et al.Alterations of the human gut microbiome in liver cirrhosis[J]. Nature, 2014, 513(7516): 59. [7] FENG Q, LIANG S, JIA H, et al.Gut microbiome development along the colorectal adenoma-carcinoma sequence[J]. Nature Communications, 2015(6): 6528. [8] SCHER J U, SCZESNAK A, LONGMAN R S, et al.Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis[J]. Elife, 2013(2): e01202. [9] BRUM J R, IGNACIO-ESPINOZA J C, ROUX S, et al. Patterns and ecological drivers of ocean viral communities[J]. Science, 2015, 348(6237): 1261498. [10] MENDE D R, WALLER A S, SUNAGAWA S, et al.Assessment of metagenomic assembly using simulated next generation sequencing data[J]. PLoS One, 2012, 7(2): e31386. [11] NIELSEN H B, ALMEIDA M, JUNCKER A S, et al.Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes[J]. Nature Biotechnology, 2014, 32(8): 822-828. [12] KARLSSON F H, TREMAROLI V, NOOKAEW I, et al.Gut metagenome in European women with normal, impaired and diabetic glucose control[J]. Nature, 2013, 498(7452): 99-103. [13] 邢鹏飞, 武晓森, 高圣超, 等. 不同施肥处理对玉米-小麦轮作土壤微生物群落功能多样性的影响[J]. 微生物学杂志, 2016, 36(1):22-29. [14] KANEHISA M, GOTO S, HATTORI M, et al.From genomics to chemical genomics: new developments in KEGG[J]. Nucleic Acids Research, 2006, 34(Suppl. 1): D354-D357. |