[1] |
陈士林, 宋经元. 本草基因组学[J]. 中国中药杂志, 2016, 41(21):3881-3889.
|
[2] |
郭明兴, 傅春升, 陈雅慧. 中药资源现状与可持续开发利用[J]. 药学研究, 2019, 38(5):295-298.
|
[3] |
GIOVANNONI S J, BRITSCHGI T B, MOYER C L, et al. Genetic diversity in sargasso sea bacterioplankton[J]. Nature, 1990, 345(6270): 60-63.
|
[4] |
WARD D M, WELLER R, BATESON M M. 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community[J]. Nature, 1990, 345(6270): 63-65.
|
[5] |
HANDELSMAN J, RONDON M R, BRADY S F, et al. Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products[J]. Chemistry & Biology, 1998, 5(10): R245-R249.
|
[6] |
MEYER M, STENZEL U, HOFREITER M. Parallel tagged sequencing on the 454 platform[J]. Nature Protocols, 2008, 3(2):267-278.
|
[7] |
QUAIL M A, KOZAREWA I, SMITH F, et al. A large genome center's improvements to the Illumina sequencing system[J]. Nature Methods, 2008, 5(12):1005-1010.
|
[8] |
MIDHA M K, WU M C, CHIU K P. Long-read sequencing in deciphering human genetics to a greater depth[J]. Human Genetics, 2019, 138(11):1201-1215.
|
[9] |
LEWIS W H, TAHON G, GEESINK P, et al. Innovations to culturing the uncultured microbial majority[J]. Nature Reviews Microbiology, 2021, 19(4): 225-240.
|
[10] |
SULTAN M, SCHULZ M H, RICHARD H, et al. A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome[J]. Science, 2008, 321(5891): 956-960.
|
[11] |
SCHUSTER S C. Next-generation sequencing transforms today's biology[J]. Nature Methods, 2008, 5(1):16-18.
|
[12] |
MONECKE S, SLICKERS P, GAWLIK D, et al. Molecular typing of ST239-MRSA-Ⅲ from diverse geographic locations and the evolution of the SCC mec Ⅲ element during its intercontinental spread[J]. Frontiers in Microbiology, 2018, 9:1436.
|
[13] |
JOHNSON J S, SPAKOWICZ D J, HONG B Y, et al. Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis[J]. Nature Communications, 2019, 10(1): 5029.
|
[14] |
PARKHOMCHUK D, BORODINA T, AMSTISLAVSKIY V, et al. Transcriptome analysis by strand-specific sequencing of complementary DNA[J]. Nucleic Acids Research, 2009, 37(18): e123.
|
[15] |
陈龙, 董亚晨, 赵建华, 等. 宏基因组测序[J]. 高科技与产业化, 2017(5):40-45.
|
[16] |
KARST S M, DUEHOLM M S, MCILROY S J, et al. Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias[J]. Nature Biotechnology, 2018, 36(2): 190-195.
|
[17] |
刘蓬蓬, 陈江宁, 孟莉, 等. 基于Illumina MiSeq高通量测序分析黄芪内生细菌多样性[J]. 中草药, 2018, 49(11):2640-2645.
|
[18] |
李莹, 钟海蓉, 李奕松, 等. 基于高通量测序研究甘松根际细菌及药用部位内生细菌群落结构及多样性[J]. 中草药, 2022, 53(3):835-847.
|
[19] |
刘丽, 陈绍通, 张腾, 等. 霍山石斛菌根真菌多样性及差异性的研究[J]. 天然产物研究与开发, 2021, 33(11):1894-1900.
|
[20] |
WANG H Y, KANG C Z, WANG S, et al. Research strategies for endophytes in medicinal plants based on high-throughput sequencing and traditional culture and isolation methods[J]. China Journal of Chinese Materia Medica, 2021, 46(8):1910-1919.
|
[21] |
ZUO J J, ZU M T, LIU L, et al. Composition and diversity of bacterial communities in the rhizosphere of the Chinese medicinal herb Dendrobium[J]. BMC Plant Biology, 2021, 21(1): 127.
|
[22] |
KUI L, CHEN B Z, CHEN J, et al. A comparative analysis on the structure and function of the Panax notoginseng rhizosphere microbiome[J]. Frontiers in Microbiology, 2021, 12: 673512.
|
[23] |
刘珍珍, 谷萌萌, 张臣, 等. 基于高通量测序的三七微生物群落结构特征分析[J]. 中草药, 2020, 51(1):204-209.
|
[24] |
赵智灵, 刘学周, 魏晓雨, 等. 人参可利用内生菌株的筛选和鉴定[J]. 中草药, 2015, 46(14):2143-2148.
|
[25] |
蒋靖怡, 杜用玺, 王铁霖, 等. 基于高通量测序的紫花丹参与白花丹参根际真菌群落结构研究[J]. 世界中医药, 2019, 14(11):2835-2839.
|
[26] |
HUO X W, WANG Y, ZHANG D W, et al. Characteristics and diversity of endophytic bacteria in endangered Chinese herb Glehnia littoralis based on illumina sequencing[J]. Polish Journal of Microbiology, 2020, 69(3):283-291.
|
[27] |
宋欢, 刘洁, 宋萍, 等. 内生真菌和内生细菌接种对雷公藤生长和次生代谢产物积累的影响[J]. 热带亚热带植物学报, 2020, 28(4):347-355.
|
[28] |
明乾良. 内生真菌对丹参毛状根生长和次生代谢的影响及其分子机制[D]. 上海: 第二军医大学, 2014.
|
[29] |
YOU H, YANG S J, ZHANG L, et al. Promotion of phenolic compounds production in Salvia miltiorrhiza hairy roots by six strains of rhizosphere bacteria[J]. Engineering in Life Sciences, 2018, 18(3):160-168.
|
[30] |
WANG H, LI J Y, LIANG X X, et al. Taxonomic and functional diversity of Dendrobium officinale microbiome in Danxia habitat[J]. Journal of Applied Microbiology, 2022, 132(5): 3758-3770.
|
[31] |
ZHONG C F, CHEN C Y, GAO X, et al. Multi-omics profiling reveals comprehensive microbe-plant-metabolite regulation patterns for medicinal plant Glycyrrhiza uralensis Fisch[J]. Plant Biotechnology Journal, 2022, 20(10): 1874-1887.
|
[32] |
JO I H, LEE J S, HONG C E, et al. Isoform sequencing provides a more comprehensive view of the Panax ginseng transcriptome[J]. Genes, 2017, 8(9): 228.
|
[33] |
LI J, HARATA-LEE Y, DENTON M D, et al. Long read reference genome-free reconstruction of a full-length transcriptome from Astragalus membranaceus reveals transcript variants involved in bioactive compound biosynthesis[J]. Cell Discovery, 2017, 3(1): 17031.
|
[34] |
王红阳, 康传志, 王月枫, 等. 药用植物微生物组的研究现状及展望[J]. 中国中药杂志, 2022, 47(20):5397-5405.
|
[35] |
HUANG W J, LONG C L, LAM E. Roles of plant-associated microbiota in traditional herbal medicine[J]. Trends in Plant Science, 2018, 23(7):559-562.
|
[36] |
DONG L L, NIU W H, WANG R, et al. Changes of diversity and composition of fungal communities in rhizosphere of Panax ginseng[J]. China Journal of Chinese Materia Medica, 2017, 42(3):443-449.
|
[37] |
WEI C B, GU W, TIAN R, et al. Comparative analysis of the structure and function of rhizosphere microbiome of the Chinese medicinal herb Alisma in different regions[J]. Archives of Microbiology, 2022, 204(7):448.
|
[38] |
GUO C W, YANG M, JIANG B B, et al. Moisture controls the suppression of Panax notoginseng root rot disease by indigenous bacterial communities[J]. mSystems, 2022, 7(5): e0041822.
|
[39] |
张文力. 高通量测序数据分析现状与挑战[J]. 集成技术, 2012, 1(3):20-24.
|
[40] |
黄江庆, 李彬. 高通量测序在细菌进化分析中的应用与展望[J]. 中华检验医学杂志, 2021, 44(2):171-174.
|